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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015808445.1_cds_XP_016495335.1_9660
CDS Infomation

[gene=LOC107814435] [db_xref=GeneID:107814435] [protein=calcium-transporting ATPase 3, endoplasmic reticulum-type-like] [exception=annotated by transcript or proteomic data] [protein_id=XP_016495335.1] [location=join(1130..1249,2258..2365,5780..5932,6396..6500,17338..>17534,<36090..36188,36274..36419,36572..36629,37644..37736,47041..47091,47185..47316,48412..48513,51444..51498,51846..51931,52815..52963,54073..54178,54320..54373,55066..55111,55542..55609)] [gbkey=CDS]
Sequence

ATGGCTCGTTTAAATGCTATTGTGAGATCCTTGCCATCCGTGGAAACCTTGGGCTGCACG
ACAGTAATCTGCAGCGACAAGACTGGTACTCTCACAACAAATATGATGTCTGTGTCAAAG
ATCTGTGTGCTTCATTCAGTAAATAATGGTCCAGTGGCCTCTGAATACGTCATCAGTGGC
ACAACTTATGCACCAGAAGGTTTTATATTTGACAGCTTGGGAGCCCAGCTAGAGATTCCT
GCACAACTTCCTTGTCTTCTTCATATAGCAATGTGCTCAGCTCTTTGCAATGAGTCTGTT
ATACAGTACAACCCAGATAAGAGGATTTACGAGAAGATTGGTGAATCAACTGAAGTTGCC
CTTCGTTTGCTGGCAGAAAAAATTGGTCTTCCTGGTTTTGATACAATGCCATCTGCTTTA
AATATGCTAAGCAAGCATGAACGGGCATCTTATTGTAATCGCTATTGGGAAAGCCAATTT
AAAAAGGTTTCTGTACTGGAATTTTCACGTGATCGCAAAATGATGAGTGTGCTTTGTAGC
CGAAAGCAGATGGAGATAATGTTCTCAAAAGGAGCTCCGGAAAGCATACTTTCAAGATGT
AACAATATACTGTGTAATGATGATGGTTCTACAGTCCCTCTTTCTGCACATATTAGAGCT
CAGTTGGAAGCAAAATTTAATAGGTTGGGATGCTTGATCCACCAAGGGATGAAGTAAGAA
ATGCCATCCTTTCATGTATGAATGCGGGCATACGTGTAATCGTTGTTACTGGGGATAACA
AGACAACTGCAGAATCCTTGTGCCAAAAAATCGGTGCCTTTGATCACTTGGGAGATTTTA
CTGGGTTTTCTTATACTGCTTCTGAGTTTGAAGAACTTCCGGCATTGCAGAAGTCAGTGG
CATTACAGCGAATGACAATTTTATCCAGGGTAGAACCATCCCACAAGAGGATGCTTGTTG
AAGCATTACAGAATCAAAATGAAGTGGTTGCTATGACTGGAGATGGAGTCAATGATGCAC
CTGCATTGAAGAAAGCAAACATTGGAATTGCCATGGGATCTGGAACTGCAGTTGCGAAGA
GTGCTTCAGATATGGTTTTAGCAGATGATAACTTTGCCACTGTTGTTGCTGCGGTTGCTG
AAGGAAGGGCTATCTACAACAATACAAAACAATTTATTAGATACATGATATCTTCAAATA
TTGGTGAAGTGGTCTGTATTTTTGTGGCAGCTATGCTTGGGATTCCTGATACTCTTGTCC
CTGTCCAACTGCTATGGGTAAATCTAGTCACTGATGGATTGCCTGCCACTGCTATTGGGT
TTAATAAACAAGACTCAGATGTTATGAAATCCAAACCTCGGAAGGTCAATGAAGCAGTAG
TTTCTGGGTGGCTGTTTTTTCGTTATCTAGTTATTGGAGCATATGTTGGACTTGCCACTG
TTGCAGGATTCATATGGTGGTTTGTTTATTATGATAACGGACCCAAACTCCCATACAATG
AATTGATGAATTTTGACAGTTGTTCAACCAGGGAAGCAAATTATCCATGTAGTATATTCA
GTGATCGCCACCCATCTACTGTTTCAATGACGGTGCTTGTTGTTGTTGAGATGTTCAATG
CATTGAATAATCTCAGTGAAAATCAATCCTTACTTGTCATCCCTCCATGGAGTAATTTAT
GGCTTGTTGGTTCAATTATCTTCACCATGATCCTTCACATCCTCATTCTTTATGTGCAAC
CATTATCCGCTCTATTCTCTGTGACACCGTTAAGCTGGGCAGAGTGGACAGCTGTGCTAT
ATCTTTCATTTCCTGTGATAATAATTGATGAAATACTGAAGTTCTTCTCTCGGAATTCAG
GAATAAGGTTCACTTTCAGATTCAGACGTGCTGACTTACTTCCAAAAAGAGAAGTACGCG
ACAAGTAA

Peptide Sequence

PEP ID

XP_016495335.1
PEP Infomation

PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Nicotiana tabacum]
Sequence

MARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVLHSVNNGPVASEYVISG
TTYAPEGFIFDSLGAQLEIPAQLPCLLHIAMCSALCNESVIQYNPDKRIYEKIGESTEVA
LRLLAEKIGLPGFDTMPSALNMLSKHERASYCNRYWESQFKKVSVLEFSRDRKMMSVLCS
RKQMEIMFSKGAPESILSRCNNILCNDDGSTVPLSAHIRAQLEAKFNSFAGKETLRCLAL
ALKRMPMGQQSLSFDDENDLTFIGLVGMLDPPRDEVRNAILSCMNAGIRVIVVTGDNKTT
AESLCQKIGAFDHLGDFTGFSYTASEFEELPALQKSVALQRMTILSRVEPSHKRMLVEAL
QNQNEVVAMTGDGVNDAPALKKANIGIAMGSGTAVAKSASDMVLADDNFATVVAAVAEGR
AIYNNTKQFIRYMISSNIGEVVCIFVAAMLGIPDTLVPVQLLWVNLVTDGLPATAIGFNK
QDSDVMKSKPRKVNEAVVSGWLFFRYLVIGAYVGLATVAGFIWWFVYYDNGPKLPYNELM
NFDSCSTREANYPCSIFSDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLV
GSIIFTMILHILILYVQPLSALFSVTPLSWAEWTAVLYLSFPVIIIDEILKFFSRNSGIR
FTFRFRRADLLPKREVRDK

Transcript Sequence

Gene sequence data has not been registered.